Characterization of EST-SSR and genomic-SSR markers in the clam, Meretrix meretrix
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چکیده
منابع مشابه
Mining of EST-SSR markers in clam Meretrix meretrix larvae from 454 shotgun transcriptome.
A total of 2,970 EST-SSRs (2.38%) were identified by transcriptome sequencing of clam Meretrix meretrix (751,970 reads, ~310.82 Mbp), using 454 Genome Sequencer FLX next-generation sequencing platform. Dinucleotide SSR was the dominant repeat type (40.2%), followed by trinucleotide (37.8%), tetranuleotide (12.0%) and pentanucleotide (2.0%) SSR. The dominant repeat motif was AT (71.3%) in the di...
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Tibetan annual wild barley is rich in genetic variation. This study was aimed at the exploitation of new SSRs for the genetic diversity and phylogenetic analysis of wild barley by data mining. We developed 49 novel EST-SSRs and confirmed 20 genomic SSRs for 80 Tibetan annual wild barley and 16 cultivated barley accessions. A total of 213 alleles were generated from 69 loci with an average of 3....
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Meretrix meretrix is one of the important commercial bivalves in China. A total of 198 individual clams were collected from 5 locations characteristic of the clam's 5 main natural habitats in China, that is, Shandong, Jiangsu, Fujian, Guangdong, and Guangxi. Ten polymorphic microsatellite markers were selected to examine the genetic diversity and identify genetic differences between the 5 popul...
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The clam Meretrix meretrix Linnaeus (M. meretrix, Veneridae), is a popular edible shellfish with abundant nutrition and valuable medical properties widely distributed in eastern Asia. As a kind of popular sea food diet, many bioactive components such as peptides, proteins, enzymes, polysaccharide, minerals, essential vitamins, essential amino acids and enzyme inhibitors, have been purified from...
متن کاملEST-SSR: A New Class of Genetic Markers in Cotton
S. N. Qureshi, Department of Plant and Soil Science, P.O. Box 9555, Mississippi State University, Mississippi State, MS 39762; S. Saha and J. N. Jenkins, USDA-ARS, Crop Science Research Laboratory, P.O. Box 5367, Mississippi State, MS 39762; Ramesh V. Kantety, Department of Crop & Soil Sciences, 726 Bradfield Hall, Cornell University, Ithaca, NY 14853 * Corresponding author: [email protected]...
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ژورنال
عنوان ژورنال: Conservation Genetics Resources
سال: 2011
ISSN: 1877-7252,1877-7260
DOI: 10.1007/s12686-011-9426-3